신경과학

Molecularly defined and spatially resolved cell atlas of the whole mouse brain을 보고. 231215

ss_salix 2023. 12. 15. 15:13

 

 

 

와......

너무 이쁘게 잘 했다 😎👍👍

(그래픽적으로) 어케 했음? ㅋㅋㅋㅋ

진짜 어케 했음...? 저도 해보고 싶습니다!!

3D 모델은 엄청 오래전에 보던거 그대로인 것 같은데 🤔

 

감상 적기보다는 그냥 미래 참고용으로 논문 내의 database 적힌거 보기 쉽게 밑에 풀어서 옮기는 것으로다가....ㅎㅎ

 

어떻게보면 당연하게 생각하고 있었지만, 정말

분자적 특징으로 뇌가 구획화되고 tagging이 될 수 있게 된 구조 그 자체가

정말 컴퓨터나 기계조립식으로 된거 아닌가 싶을 정도로 잘 나뉘어져있고 또 매우 분화되어 있다는 것이

신기하다면 신기하다 증말

 


 

 

Processed MERFISH data are also accessible and explorable in an interactive

manner through two platforms:

 

(1) the Allen Brain Cell Atlas

 

https://knowledge.brain-map.org/data/5C0201JSVE04WY6DMVC/explore

https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html

https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html

https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html

https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-4.html

 

 

(2) the CELLxGENE database

 

https://cellxgene.cziscience.com/collections/0cca8620-8dee-45d0-aef5-23f032a5cf09

 

The scRNA-seq datasets (FASTQ files) obtained by the Allen Institute are available at

NeMO

 

https://assets.nemoarchive.org/dat-qg7n1b0.

 

The processed scRNA-seq data along with the transcriptomic cell-type taxonomy were

visualized at the Allen Brain Cell Atlas mouse whole-brain cell-type

atlas,

https://portal.brain-map.org/atlases-and-data/bkp/abc-atlas

 

Instruction for access of the processed scRNA-seq data is available

at

https://github.com/AllenInstitute/abc_atlas_access/blob/main/descriptions/WMB-10X.md

 

The CellChat database74 is available at

 

http://www.cellchat.org/.

 

Source data are provided with this paper Bulk RNA-seq data of the whole mouse brain are available at NCBI GEO

data repository

 

GSE246919

 

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